Science AI skills & agents
Lab work, datasets and papers — the jobs a researcher finishes. 119 listings — 117 skills and 2 agents — each free, credited to its author, with the full source on its page.
SkillDatabase Query Lookup
K-Dense-AI/scientific-agent-skills · by K-Dense-AIQuery documented public database APIs with explicit endpoints, filters, pagination, and provenance. Use when a scientific, regulatory, fina…★ 46k GitHub stars
SkillResearch Grant ProposalK-Dense-AI/scientific-agent-skills · by K-Dense-AIWrite competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget prepara…★ 46k GitHub stars
SkillResearch Manuscript WriterK-Dense-AI/scientific-agent-skills · by K-Dense-AIDraft, revise, and audit scientific manuscripts or reports with explicit evidence provenance, reporting-guideline coverage, authorship acco…★ 46k GitHub stars
SkillAcademic Citation ManagerK-Dense-AI/scientific-agent-skills · by K-Dense-AIComprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata,…★ 46k GitHub stars
SkillMaterials Structure AnalyzerK-Dense-AI/scientific-agent-skills · by K-Dense-AIAnalyze, validate, convert, and transform materials structures and computed materials data with current pymatgen APIs, including local phas…★ 46k GitHub stars
SkillScholarly Evidence CompilerK-Dense-AI/scientific-agent-skills · by K-Dense-AICompile current scholarly evidence for a scientific manuscript or research brief. Use when the user explicitly asks to gather literature, r…★ 46k GitHub stars
SkillZotero Reference ManagerK-Dense-AI/scientific-agent-skills · by K-Dense-AIInteract with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and delete items, collectio…★ 46k GitHub stars
SkillMolecular Dynamics SimulatorK-Dense-AI/scientific-agent-skills · by K-Dense-AIRun and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run…★ 46k GitHub stars
SkillParticle Image VelocimetryK-Dense-AI/scientific-agent-skills · by K-Dense-AIParticle Image Velocimetry (PIV) analysis with OpenPIV. Use when extracting velocity fields from PIV image pairs, analyzing fluid dynamics…★ 46k GitHub stars
SkillSystematic Literature ReviewK-Dense-AI/scientific-agent-skills · by K-Dense-AIConduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). Th…★ 46k GitHub stars
SkillMolecular Biology ToolkitK-Dense-AI/scientific-agent-skills · by K-Dense-AIComprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic N…★ 46k GitHub stars
SkillGget Query ToolK-Dense-AI/scientific-agent-skills · by K-Dense-AIFast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold…★ 46k GitHub stars
SkillScientific Peer Review AssistantK-Dense-AI/scientific-agent-skills · by K-Dense-AIPrepare evidence-bounded, constructive peer-review drafts and structured manuscript assessments. Use for authorized review of scientific ma…★ 46k GitHub stars
SkillBioinformatics Database QueryK-Dense-AI/scientific-agent-skills · by K-Dense-AIUnified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single…★ 46k GitHub stars
SkillScientific Hypothesis BuilderK-Dense-AI/scientific-agent-skills · by K-Dense-AIFormulate evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating p…★ 46k GitHub stars
SkillSingle-Cell RNA AnalyzerK-Dense-AI/scientific-agent-skills · by K-Dense-AIStandard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, different…★ 46k GitHub stars
SkillDeepChem Molecular PropertiesK-Dense-AI/scientific-agent-skills · by K-Dense-AIMolecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs whe…★ 46k GitHub stars
SkillGene Expression AnalyzerK-Dense-AI/scientific-agent-skills · by K-Dense-AIDifferential gene expression analysis for bulk RNA-seq with PyDESeq2, including formulaic designs, Wald tests, FDR correction, LFC shrinkag…★ 46k GitHub stars
SkillSingle-Cell Data StructureK-Dense-AI/scientific-agent-skills · by K-Dense-AIData structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem.…★ 46k GitHub stars
SkillCZ CELLxGENE Census QueryK-Dense-AI/scientific-agent-skills · by K-Dense-AIQuery the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need populat…★ 46k GitHub stars
SkillDatamol Cheminformatics WrapperK-Dense-AI/scientific-agent-skills · by K-Dense-AIPythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsi…★ 46k GitHub stars
SkillLaTeX Research PosterK-Dense-AI/scientific-agent-skills · by K-Dense-AICreate professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic p…★ 46k GitHub stars
SkillRDKit Molecular CheminformaticsK-Dense-AI/scientific-agent-skills · by K-Dense-AICheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure se…★ 46k GitHub stars
SkillStatistical Analysis GuideK-Dense-AI/scientific-agent-skills · by K-Dense-AIGuided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, a…★ 46k GitHub stars